PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531582.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 236aa    MW: 25725.2 Da    PI: 7.7181
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260735.8e-235101997
          DUF260   9 rrkCakd...Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     r +C+++   C+l+p++     +++q +++ +v+k+FG++ ++++++++p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ e++
  XP_010531582.1   5 RHECESNelqCILRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPDSQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAMETV 99 
                     5667765555*******9999777889****************************************************************9998 PP

          DUF260  96 ll 97 
                     l+
  XP_010531582.1 100 LR 101
                     76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.2071105IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-18599IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MCTPRHECES NELQCILRPC LQWIESAEAQ GHATVFVAKF FGRAGLMSFI SSVPDSQRPA  60
LFQSLLFEAC GRTVNPVNGA VGLLWTGNWH VCQAAMETVL RGGSLRPIPE LLSTGSPPPF  120
MATDQASKIS TSMWRLPRKD GSTDDNPSHH CRFSRSKAAT EKRKRQKPDQ PAGSNLDLHL  180
NHGLPSAAPC KEVITGDRPG TPSMISEESV TTSCWDGGFG DQYGNGGERK LLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765421e-84KR076542.1 Boehmeria nivea lateral organ boundaries domain protein (LBD16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531582.11e-177PREDICTED: LOB domain-containing protein 39
SwissprotQ9SZE89e-92LBD39_ARATH; LOB domain-containing protein 39
TrEMBLB9SGY62e-92B9SGY6_RICCO; LOB domain-containing protein, putative
STRINGAT4G37540.12e-89(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-88LOB domain-containing protein 39